PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS636827.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 50aa    MW: 5306.98 Da    PI: 4.8437
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS636827.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.4e-14526627
                  -SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                  C+++++tGtCkyG++CkF H+p
  EcS636827.10  5 CPYYLKTGTCKYGATCKFDHPP 26
                  ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.375127IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-5126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7326IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-12426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-7424IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
DAIVCPYYLK TGTCKYGATC KFDHPPPGEL IAMAATQGQS ASEGEEAKEK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856887.11e-19zinc finger CCCH domain-containing protein 37
SwissprotQ941Q37e-14C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2N9H9N51e-19A0A2N9H9N5_FAGSY; Uncharacterized protein
STRINGVIT_19s0085g01180.t017e-18(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-16floral homeotic protein (HUA1)