PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS656811.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 55aa MW: 6244.92 Da PI: 5.6272

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS656811.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	32.4	2.6e-10	2	51	45	94
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +l+++p+++r da++ lvyeA+ar +dPv+G g + ++ + e+l++ EcS656811.10 2 ILQQVPNDRRADAIHRLVYEANARENDPVNGRRGQLAQMIAEEERLQVPH 51 799*********************************99999999888755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.55	1	55	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-8	2	49	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 55 aa Download sequence Send to blast
EILQQVPNDR RADAIHRLVY EANARENDPV NGRRGQLAQM IAEEERLQVP HQAAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A059AGU2	8e-29	A0A059AGU2_EUCGR; Uncharacterized protein
STRING	XP_010033333.1	1e-29	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35076	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	2e-08	ASYMMETRIC LEAVES 2-like 9