PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS657709.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 110aa    MW: 12674.6 Da    PI: 10.8542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS657709.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-132365246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eE+ l+  +    G++ W+ Ia+ ++ gRt++++k++w++
     EcS657709.10 23 GGFSEEEENLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 65
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.5E-12228IPR009057Homeodomain-like
SuperFamilySSF466893.98E-21371IPR009057Homeodomain-like
PROSITE profilePS5129421.2531771IPR017930Myb domain
SMARTSM007175.8E-112169IPR001005SANT/Myb domain
PfamPF002491.2E-112365IPR001005SANT/Myb domain
CDDcd001678.27E-82567No hitNo description
Gene3DG3DSA:1.10.10.601.1E-182968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
LKRCGKSCRL RWLNYLRPNI KHGGFSEEEE NLICSLYISI GSRWSIIAAQ LPGRTDNDIK  60
NYWNTRLKKK LLGKQRKDPN ARRGSGSLKQ ELKRGISLGK SNTNSMDYSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1937140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061604.14e-73PREDICTED: transcription repressor MYB6
SwissprotQ9M2Y93e-48RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A059BSG57e-72A0A059BSG5_EUCGR; Uncharacterized protein
STRINGXP_010061604.11e-72(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-46myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]