PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS658905.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 120aa MW: 14099.2 Da PI: 9.9048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS658905.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.1	2.9e-18	23	92	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ew+fF + + +r+t g+Wk+tg d+++++ +++++g+kktLvf++g+ ++g t+Wv+hey+l EcS658905.10 23 KVQEWWFFYLQTS------PIQRSTPLGFWKKTGVDRTIKAGdSNREIGTKKTLVFHRGHGKRGIGTKWVIHEYHL 92 4568888877655......457999*************9866778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.053	1	111	IPR003441	NAC domain
Pfam	PF02365	4.1E-11	20	92	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-20	26	108	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
ISSSLIRFEL NLTEQSIIPP DDKVQEWWFF YLQTSPIQRS TPLGFWKKTG VDRTIKAGDS 60 NREIGTKKTL VFHRGHGKRG IGTKWVIHEY HLLTNNLNEL FPHVVCNLSL VYFFWFTTFI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018733119.1	5e-67	PREDICTED: protein NTM1-like 9
Swissprot	Q9FFI5	7e-16	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A059BBG7	1e-57	A0A059BBG7_EUCGR; Uncharacterized protein
TrEMBL	A0A059BC60	9e-58	A0A059BC60_EUCGR; Uncharacterized protein
STRING	XP_010065780.1	4e-61	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	3e-18	NAC domain containing protein 62

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]