PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS662948.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 228aa    MW: 26137.3 Da    PI: 9.8814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS662948.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-142731893
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
            B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                  +p +f++++  +   s   tl+ ++g +W v +  rk+ ++ ++ +GW+eFv+   +  g f+vF+++g ++f+ +
  EcS662948.10  2 IPENFVKKFRDE--LSSVATLNVPDGHVWHVGI--RKSESKLWFHEGWQEFVQHYSIGIGYFLVFRYEGGTTFQVF 73
                  9*****999644..6679999************..********************************997777544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-17176IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-16176No hitNo description
Gene3DG3DSA:2.40.330.106.3E-18176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.592178IPR003340B3 DNA binding domain
PfamPF023621.2E-11273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
RIPENFVKKF RDELSSVATL NVPDGHVWHV GIRKSESKLW FHEGWQEFVQ HYSIGIGYFL  60
VFRYEGGTTF QVFIYNLTTS EINYHSNGRV PSEMPHHSRQ YHVFKDMEDD DAVDISSSST  120
YYPSGDSLKR KAVNSSVDQL TLSRGYNSMH LQNLFNGTVH QQKGGANSHA GMRPIEDIVI  180
QAGGIKFKSE DEVKVQSTDQ STRKIKKSSK KKRKNDPSKL SKLKFLNY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066068.11e-160PREDICTED: B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-46VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A059BCJ51e-160A0A059BCJ5_EUCGR; Uncharacterized protein
STRINGXP_010066068.11e-159(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-46B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]