PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS666206.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 68aa    MW: 8106.18 Da    PI: 10.7454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS666206.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.4e-094668326
                     SS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWkt 26
                      W++eE e+++da +++G++ Wk+
     EcS666206.10 46 QWSKEELERFYDAYRKHGKD-WKK 68
                     6*****************99.*97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-64168IPR009057Homeodomain-like
PROSITE profilePS5129310.0964268IPR017884SANT domain
PfamPF002496.2E-64668IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MAPTRKSRSV YKRYSNLNEV SPEKDVGSSK SSRNRKKKLS DLLGPQWSKE ELERFYDAYR  60
KHGKDWKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048971.21e-38PREDICTED: LOW QUALITY PROTEIN: protein ALWAYS EARLY 2-like
SwissprotQ6A3313e-21ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBLA0A059CSG14e-37A0A059CSG1_EUCGR; Uncharacterized protein
TrEMBLA0A059CSP14e-37A0A059CSP1_EUCGR; Uncharacterized protein
TrEMBLA0A059CT705e-37A0A059CT70_EUCGR; Uncharacterized protein
STRINGXP_010048971.15e-38(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2125155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-15DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]