PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS670990.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 157aa    MW: 18135.3 Da    PI: 4.9511
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS670990.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind64.23e-20691171260
                   TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  12 deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                   +++ +++isw+++g+ fvv+ + ef++++LpkyFkh+nf+SF+RQLn+Y
  EcS670990.10  69 KKKKRKMISWNREGSGFVVWCPAEFSEHMLPKYFKHNNFSSFIRQLNTY 117
                   44899******************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-2221119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-727148IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.9E-1769117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-1573117IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAAREEVSEQ NSNLQSTSRS TSPRTRGPAP FLLKTFDLLE EAGGDDLGEE EEEEEEEEDD  60
DGDGEGMMKK KKRKMISWNR EGSGFVVWCP AEFSEHMLPK YFKHNNFSSF IRQLNTYVSL  120
SLSLSLSRSL SLWIRCMRSG LICRFHLPRF LEGTRWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873KKKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052317.11e-46PREDICTED: heat stress transcription factor B-2a
TrEMBLA0A059CCQ33e-45A0A059CCQ3_EUCGR; Uncharacterized protein
STRINGXP_010052316.14e-46(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-19HSF family protein