PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS676198.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 130aa    MW: 14292 Da    PI: 8.2593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS676198.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-053959323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C  C ksF ++  L+ H+r+H
  EcS676198.10 39 CDWCEKSFQSQPALNGHMRVH 59
                  *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.31E-63762No hitNo description
SMARTSM003555.6E-43759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.453764IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-63760IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-73761IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEGGKELALL SGSSSAGTME GGKKKRQRSE LDASGGHGCD WCEKSFQSQP ALNGHMRVHK  60
DRPRRQDKQP KQHVHEEKDE EVVSVLLKLQ KGTLNKQEMK GDDGAVSSSA AEVQRKKINM  120
ALDLNEVAPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227KKKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034710.13e-11PREDICTED: basic salivary proline-rich protein 4