PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS708835.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 116aa MW: 12280.8 Da PI: 8.2231

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS708835.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.5e-10	56	81	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ EcS708835.10 56 KTRLCNKFNTAEGCKFGDKCHFAHGE 81 8***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.427	1	17	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-15	51	86	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-9	52	85	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.629	54	82	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.2E-4	54	81	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	56	81	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
TSGCPFGEGC HFLHYVPGGF KAVSQMLNLG GNPTLPHASR NAAPSYPEAP SPTAVKTRLC 60 NKFNTAEGCK FGDKCHFAHG EWELGKPTGP SYDDPRGMVP PSGRYGGRNE PPPPGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043856.1	2e-81	PREDICTED: zinc finger CCCH domain-containing protein 14
Swissprot	Q7F8R0	4e-33	C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBL	A0A059D5U6	5e-80	A0A059D5U6_EUCGR; Uncharacterized protein
TrEMBL	A0A059D6M4	2e-80	A0A059D6M4_EUCGR; Uncharacterized protein
STRING	XP_010043856.1	8e-81	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2336	28	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-15	C3H family protein