PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS714362.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 146aa MW: 16862.4 Da PI: 7.7634

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS714362.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.5	1.4e-19	55	139	1	91
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp +f++ h+ +++++t+tlede+g ++ v++i++k+ l++GWk+F +a +L egD++vF+l++ s f+ EcS714362.10 55 FLKTMVRSNVTTGFWLHLPMPFCKLHM--PRNNITVTLEDENGDEYPVNYIVDKTA----LSAGWKKFSSARELMEGDVLVFQLVRASVFK 139 89*******************9997..56889************888887....**********************9988884 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.0E-21	49	143	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-24	51	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.54E-26	53	143	No hit	No description
PROSITE profile	PS50863	12.506	55	146	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.0E-17	55	139	IPR003340	B3 DNA binding domain
SMART	SM01019	6.7E-19	55	146	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
TMHEQVASTY HRETKRQKRL VIDDLYHYDH VGGKSPAMER AEEFRANLPA EIPSFLKTMV 60 RSNVTTGFWL HLPMPFCKLH MPRNNITVTL EDENGDEYPV NYIVDKTALS AGWKKFSSAR 120 ELMEGDVLVF QLVRASVFKV TPFVFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028536.1	9e-98	PREDICTED: B3 domain-containing protein Os01g0234100
Refseq	XP_018718479.1	9e-98	PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBL	A0A059AMR8	1e-68	A0A059AMR8_EUCGR; Uncharacterized protein
STRING	XP_010028536.1	3e-97	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16717	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-31	B3 family protein