PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS717727.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 97aa    MW: 11289.1 Da    PI: 11.6344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS717727.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151455142
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                     +g+WT+eEd++l+d+++++G g+W++ ++  g+ R++k+c++
     EcS717727.10 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRL 55
                     79******************************99******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-16556IPR009057Homeodomain-like
SuperFamilySSF466891.22E-10956IPR009057Homeodomain-like
PROSITE profilePS5129413.228960IPR017930Myb domain
SMARTSM007171.8E-91363IPR001005SANT/Myb domain
PfamPF002493.6E-131455IPR001005SANT/Myb domain
CDDcd001671.21E-81656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLQVDKL  60
PPPRPQARQL HRGRRRAHHQ APQLARQQVR LPFHRLQ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748489.12e-34transcription repressor MYB6-like
SwissprotQ388514e-33MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2P9JZB81e-33A0A2P9JZB8_AMATR; Transcription factor MYB3
STRINGGorai.009G288900.13e-33(Gossypium raimondii)
STRINGXP_002534486.13e-33(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-35myb domain protein 6