PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS722054.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 161aa MW: 18213.5 Da PI: 7.9899

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS722054.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.6	3.9e-12	2	50	46	98
EEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 46 WevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 W+v ++ +++ GW++Fvk++ L+ +D++vF+++g+s+f +v vf+ EcS722054.10 2 WKVGT--MADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 50 99999..888999****************************9999..777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.324	1	52	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-9	2	49	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.65E-11	2	51	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-12	2	51	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.24E-9	15	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
AWKVGTMADD ENLLFKHGWQ DFVKDHALEK NDILVFRYNG ESSFNVLVFN QHSLCEKETA 60 YFHKRCSHNP TDRECGTKRK LGDSSVEAMH TPVSYDVKRT LTEDPREDRT VTVADRNILS 120 QAKASENLIE AGASGKPRNK KATPKKKLSV AFDCLEEKPG T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059783.1	1e-110	PREDICTED: B3 domain-containing protein REM16 isoform X2
Refseq	XP_010059786.1	1e-110	PREDICTED: B3 domain-containing protein REM16 isoform X4
TrEMBL	A0A059BJJ9	1e-109	A0A059BJJ9_EUCGR; Uncharacterized protein
STRING	XP_010059782.1	1e-110	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10428	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-20	B3 family protein