PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS722803.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 174aa MW: 20572.7 Da PI: 7.5419

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS722803.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.3	6.6e-45	12	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh +deel+ +yLk+k+ g++ + ++i+e+d +k+ePw+L + + ++ke++f+++ ++ky ++kr+nr+t +gyWk t k+++++s EcS722803.10 12 LPPGFRFHASDEELLLRYLKPKILGQPdEPYYNIIPEIDACKFEPWELLHifGHMFNSKELFFYCCVKRKYLKSKRANRTTVAGYWKVTSKERRIMS 108 79**********************96556678**********74343334779********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++l+g+kktLvfy+gr p+g++t+Wvmhey+l EcS722803.10 109 EdTNQLIGIKKTLVFYEGRLPEGKRTNWVMHEYHL 143 967778**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-47	8	148	IPR003441	NAC domain
PROSITE profile	PS51005	44.713	12	174	IPR003441	NAC domain
Pfam	PF02365	2.4E-23	13	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEDTISEVMS LLPPGFRFHA SDEELLLRYL KPKILGQPDE PYYNIIPEID ACKFEPWELL 60 HIFGHMFNSK ELFFYCCVKR KYLKSKRANR TTVAGYWKVT SKERRIMSED TNQLIGIKKT 120 LVFYEGRLPE GKRTNWVMHE YHLNSKLLGD NHEEGEVTFW LSFICTTQSV INNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-32	12	143	20	145	NAC domain-containing protein 19
3swm_B	1e-32	12	143	20	145	NAC domain-containing protein 19
3swm_C	1e-32	12	143	20	145	NAC domain-containing protein 19
3swm_D	1e-32	12	143	20	145	NAC domain-containing protein 19
3swp_A	1e-32	12	143	20	145	NAC domain-containing protein 19
3swp_B	1e-32	12	143	20	145	NAC domain-containing protein 19
3swp_C	1e-32	12	143	20	145	NAC domain-containing protein 19
3swp_D	1e-32	12	143	20	145	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041524.1	1e-107	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059DB68	3e-83	A0A059DB68_EUCGR; Uncharacterized protein
STRING	XP_010030908.1	1e-110	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	2e-41	TCV-interacting protein