PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS723925.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 140aa    MW: 14679.6 Da    PI: 9.0482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS723925.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12107131126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +kt+lC +fa+ G C++G+rC+FaHg
  EcS723925.10 107 FKTKLCENFAK-GSCNFGERCHFAHG 131
                   69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547911.61E-15987IPR004088K Homology domain, type 1
SMARTSM003221.2E-101484IPR004087K Homology domain
PROSITE profilePS5008413.8371579IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.6E-161586IPR004088K Homology domain, type 1
PfamPF000132.4E-101781IPR004088K Homology domain, type 1
CDDcd001051.19E-121980No hitNo description
Gene3DG3DSA:4.10.1000.108.7E-16104138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-9105136IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981106133IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10107131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0003723Molecular FunctionRNA binding
GO:0005215Molecular Functiontransporter activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
PPPPGLAAAA SFGASATAKI SIDASLAGPI IGRNGVNSKQ ICRVTGAKLS IREHDSDPNL  60
RNIELEGTFD QIKQASAMVH ELIANVASAS RPAMKNSAAH SAPRSNFKTK LCENFAKGSC  120
NFGERCHFAH GTEELNKPGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043856.11e-95PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R05e-56C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A059D5U63e-94A0A059D5U6_EUCGR; Uncharacterized protein
TrEMBLA0A059D6M41e-94A0A059D6M4_EUCGR; Uncharacterized protein
STRINGXP_010043856.15e-95(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-48C3H family protein