PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS724680.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 341aa    MW: 38169.5 Da    PI: 8.894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS724680.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-08129171346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE ++l d+++++  + +  Ia +++  Rt +++k+r+++
     EcS724680.10 129 AWTKEETDQLFDLCERFDLR-FIVIADRFPSSRTVEELKDRYYS 171
                      7*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162823.0E-31102176IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466891.33E-6126172IPR009057Homeodomain-like
SMARTSM007176.1E-8126175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6128173IPR009057Homeodomain-like
CDDcd116589.32E-20130172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDAKDILGLP KNQLPIPQEK KSRPPKEPQR KPDGISREVY ALTGGLAPLM PSVDVSQLKR  60
RPPSDEKVTW QWLPFTNSAR KDDLQLFHWV RVVNGVPPTG DYAFAKYNKS ANIIKYTNEE  120
YEKYLTDPAW TKEETDQLFD LCERFDLRFI VIADRFPSSR TVEELKDRYY SVSRALLSAR  180
APPADITGHP LVKEPYNISQ EVERKRALSM VLSQTKQQER KDTEVLAEAK RITESRMAAK  240
GPEESELPAV ANIGPDNSQR AITGDAVTPS TAMPSSAIAA SSTLMADNAS TLASLRMLRV  300
YLRTYALDQM VQAASASAGL RTIKRVEQTL QELGVCLFPL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A5e-24101184491DNA methyltransferase 1-associated protein 1
4iej_A5e-24101184491DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038302.10.0PREDICTED: SWR1-complex protein 4 isoform X1
SwissprotQ8VZL61e-175SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A059A8R50.0A0A059A8R5_EUCGR; Uncharacterized protein
STRINGXP_010038302.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85432435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-177MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]