PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS724694.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 172aa MW: 20445.3 Da PI: 7.9747

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS724694.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	135	8.1e-42	1	169	204	373
GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 Vn+ + ++l d++v+ +++rd+vL l+++++P+++v++ + +++n++ F +rf eal +sa++d l+a++ ++++er ++Ere+ grei+nv+ac EcS724694.10 1 VNCLDRFKNL-DDTVEDSNPRDAVLYLIRKIKPDIFVHAIRSSSYNAAFFETRFREALFEFSAVYDLLDATIDHNNKERLVIEREFHGREIMNVIAC 96 6666655555.899999****************************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eg++r+e+ et+++W+ r +aGFk++pl+++ +k + ++ + + + ++e+ ++++++W++r + S+W EcS724694.10 97 EGSRRIEKPETYKQWQVRHVRAGFKALPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQCWRGRISFGSSCW 169 *****************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.504	1	150	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-39	1	169	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
VNCLDRFKNL DDTVEDSNPR DAVLYLIRKI KPDIFVHAIR SSSYNAAFFE TRFREALFEF 60 SAVYDLLDAT IDHNNKERLV IEREFHGREI MNVIACEGSR RIEKPETYKQ WQVRHVRAGF 120 KALPLDQDFM KLFRGKMKAW YHKDFVLDED GNWMLQCWRG RISFGSSCWV PT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018724295.1	1e-120	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
Swissprot	Q3EDH0	4e-68	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A059D5Q9	1e-122	A0A059D5Q9_EUCGR; Uncharacterized protein
STRING	XP_010043534.1	1e-101	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	2e-70	GRAS family protein