PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS725781.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 185aa MW: 19888.6 Da PI: 9.9913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS725781.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	90	112	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++Cg+ F+ + + H + H EcS725781.10 90 ICHKCGEQFKKLDAVEAHHLSkH 112 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	91	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
IMGIGGKVGG NHSGSDSTSS TFVGTLHPGT PGPRGQYMVP SSYSFPRSMS TPSRKIDGSS 60 ATSGGSRSGG FPKSRTMVGP DAHSGSSVLI CHKCGEQFKK LDAVEAHHLS KHAVTELSDG 120 DSSKRIVEII CQTSWLKSEH SSCGQIERVL KVHNMQRTLA RFEEYREMVK IRASKLSKKH 180 PCCLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010049497.1	1e-126	PREDICTED: uncharacterized protein LOC104438113 isoform X1
TrEMBL	A0A059CDF3	1e-104	A0A059CDF3_EUCGR; Uncharacterized protein
STRING	XP_010049497.1	1e-125	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3553	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	2e-48	C2H2 family protein