PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS727687.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 111aa    MW: 13167.2 Da    PI: 9.6304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS727687.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS95.21e-291109266374
          GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq.aklllrkvksdgyrveeesgslvlg 361
                   +lfd+l++ +pre++er+ +E+ +lgre+ n +aceg er+er e++++W+ r ++aGF +vpls ++a   ++ + ++++ + + v+e  ++l++g
  EcS727687.10   1 SLFDMLDTIVPRENQERMLIEKDMLGREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRSVARFvINNIASRYH-KDFVVDEVGKWLLIG 96 
                   59***************************************************************9987661566666666.55************* PP

          GRAS 362 WkdrpLvsvSaWr 374
                   Wk+r L+++S W+
  EcS727687.10  97 WKGRFLYAFSTWK 109
                   ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.5E-271109IPR005202Transcription factor GRAS
PROSITE profilePS5098516.453189IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
SLFDMLDTIV PRENQERMLI EKDMLGREAL NTIACEGWER VERPESYKQW QLRNMRAGFV  60
QVPLSRSVAR FVINNIASRY HKDFVVDEVG KWLLIGWKGR FLYAFSTWKL A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721242.12e-71PREDICTED: scarecrow-like protein 9
RefseqXP_018721244.12e-71PREDICTED: scarecrow-like protein 9
SwissprotO809331e-43SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A8A92e-70A0A059A8A9_EUCGR; Uncharacterized protein
STRINGXP_010037825.13e-71(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15599616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.14e-46GRAS family protein