PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS728957.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 226aa    MW: 25243.8 Da    PI: 4.7053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS728957.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-19109160256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   +y+GVr+++ +g+++AeIrdp++ng  +r +lg++ t+eeA  a+++a+ +++g+
  EcS728957.10 109 RYRGVRRRP-WGKYAAEIRDPKKNG--ARRWLGTYETPEEAGLAYDQAAFAMRGA 160
                   59*******.***********9998..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-13109159IPR001471AP2/ERF domain
PROSITE profilePS5103223.103109167IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22109168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-30109168IPR001471AP2/ERF domain
SMARTSM003805.8E-34109173IPR001471AP2/ERF domain
PRINTSPR003674.6E-13110121IPR001471AP2/ERF domain
CDDcd000184.24E-24117169No hitNo description
PRINTSPR003674.6E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSTASSTMSD SDAFLLECIR QHLLNDDDFE TLAKIAENAR FHSPDPSFDA SSSPETTMSF  60
EANDYDDVDI YLDAPKDAIG FELPSSSNEQ LAVDYRDVQV NEALPGGYRY RGVRRRPWGK  120
YAAEIRDPKK NGARRWLGTY ETPEEAGLAY DQAAFAMRGA KARLNFPHLI GCDGLAPVRV  180
TRKRHHSPEA ESTSLDPNWR QEDLTGLASG PDELNGHLLS FQQTRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26107167363ATERF1
3gcc_A2e-26107167363ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058510.11e-160PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
TrEMBLA0A059C5A31e-101A0A059C5A3_EUCGR; Uncharacterized protein
STRINGXP_010058510.11e-159(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-33ethylene-responsive element binding factor 13