PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS730960.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 347aa MW: 37862.8 Da PI: 5.2532

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS730960.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.2e-10	267	315	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq EcS730960.10 267 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 315 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-16	262	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.34E-11	262	319	No hit	No description
PROSITE profile	PS50888	15.567	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-16	265	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-7	267	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-10	270	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MNSSGGSGGD DMGFPDGGNS AANCPSSGMI ANSISEEVPM MAMSSMSTLE RPPISVDPFF 60 TSGWDTLASL SHNENYGSSS LVSHGNFVGS SYPVLMDNQG FGRNGSTQLA QCLSDPRLQY 120 IGSGSISEMV GGSFGLPELN HLANHGSLPN RASNINSSGC ERNSEKGAQS CECQNSGEEP 180 DGSSAGDRRR KRSPDPSSQY CSNKNNEGDD SDVLRLQNEK KQKIEQPESA DFSKHNTKQS 240 KDDSSNDGEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRMLQEL VPGCNKITGK 300 AVMLDEIINY VQSLQQQVEV CFIWNMFLVL QDDAVVFKKL PLRSWNN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MNSSGGSGGD DMGFPDGGNS AANCPSSGMI ANSISEEVPM MAMSSMSTLE RPPISVDPFF  60
TSGWDTLASL SHNENYGSSS LVSHGNFVGS SYPVLMDNQG FGRNGSTQLA QCLSDPRLQY  120
IGSGSISEMV GGSFGLPELN HLANHGSLPN RASNINSSGC ERNSEKGAQS CECQNSGEEP  180
DGSSAGDRRR KRSPDPSSQY CSNKNNEGDD SDVLRLQNEK KQKIEQPESA DFSKHNTKQS  240
KDDSSNDGEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRMLQEL VPGCNKITGK  300
AVMLDEIINY VQSLQQQVEV CFIWNMFLVL QDDAVVFKKL PLRSWNN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061618.1	0.0	PREDICTED: transcription factor bHLH74
Refseq	XP_010061619.1	0.0	PREDICTED: transcription factor bHLH74
TrEMBL	A0A059BSH8	0.0	A0A059BSH8_EUCGR; Uncharacterized protein
STRING	XP_010061617.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-45	bHLH family protein