PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS732548.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 422aa    MW: 47693.1 Da    PI: 9.128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS732548.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.8e-057495223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ C+k+F++   L  H++ H
  EcS732548.10 74 PCSVCHKRFRSTTALFGHMKIH 95
                  5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035563325IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-5627IPR007087Zinc finger, C2H2
SMARTSM003550.0137395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15973100IPR007087Zinc finger, C2H2
PfamPF139121.1E-67597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-5393421No hitNo description
PfamPF139121.4E-10394418IPR007087Zinc finger, C2H2
SMARTSM003550.5395417IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866395422IPR007087Zinc finger, C2H2
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
KQYTGKVCDK IFSSGRVLGG HMSCHMAKNI LRREPSLAIG NGSGKARRLG YFLRENPKKS  60
WKFLGLMENA QENPCSVCHK RFRSTTALFG HMKIHLSKDD ERCDWCMDHG KGSGSMKSCR  120
DCARPIHDKD RLNLSLSSED RYVGLSKTKG HLLRSVLFYD KAMHMTRRKR TPRVSCDVDE  180
RTGGVLFSVP NGFSLSSEAK QDPANEAAVE LKIMSQGEAG FNSSGLRVEH FQKSLALDFI  240
DMEKLRITEA SEYNERHSRG YTRMKQEGVE LEVPARMLGG AWEVEHKKPE AARADEQPMH  300
EVPMMDRDMM RIAGSDSRAK AELWIEPGLN SRRDNVCTEE SPVFSELGEQ NKYKSKDTES  360
YKQDATIDAS WGIEGNRGCA EPKSIKHYSE KVKRHICSIC HKDFSSGQAL GGHKRAHYVK  420
NP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034405.10.0PREDICTED: uncharacterized protein LOC104423639
STRINGXP_010034405.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-09zinc finger of Arabidopsis thaliana 6