PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS733210.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 138aa    MW: 15467.5 Da    PI: 9.1703
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS733210.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.45.7e-2437120190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   kfY +YA++vGF +r+ ++++s  +g       +C+k+g++ ++k ++   +++r++ r gCka++ vk+ek+gkw+vt+++++HnH+l+
  EcS733210.10  37 KFYIDYARRVGFVIRIMQHRRSGIDG------RRCNKQGFSPNQKGSHGPDKKPRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 120
                   6*********************6666......57*************9****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-2237120IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
EEASENPVKG ENGDQEENAI SEPYVGMEFD SEEAAWKFYI DYARRVGFVI RIMQHRRSGI  60
DGRRCNKQGF SPNQKGSHGP DKKPRPSARE GCKATILVKM EKSGKWVVTR FVKDHNHPLV  120
VTANGFGTMV SLPFSLVA
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069579.19e-88PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
SwissprotQ9SZL83e-22FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q0EV572e-64A0A3Q0EV57_VIGRR; protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLV7B4B63e-64V7B4B6_PHAVU; Uncharacterized protein
STRINGXP_010069579.13e-87(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.12e-42FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]