PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS733297.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 120aa    MW: 14088.2 Da    PI: 6.5091
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS733297.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS92.75.7e-291115259373
          GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                   eal + sa++d l++++ +++ +r+++Er ++g+ei+n+vaceg er+e+ et+++ + rl+++GF+++pl+++ +k+ ++ l+  + + +++eee+
  EcS733297.10   1 EALFHLSAIYDLLDTTVVHNNVQRSVLERDVFGQEIMNIVACEGLERVEKPETYKQRQLRLTRVGFQQLPLDQELMKKTRAKLSGNYRKDFELEEEN 97 
                   799************************************************************************************888******* PP

          GRAS 356 gslvlgWkdrpLvsvSaW 373
                   ++++lgW++r +  +++W
  EcS733297.10  98 NWMLLGWRGRIISCCTCW 115
                   ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.0E-261115IPR005202Transcription factor GRAS
PROSITE profilePS5098516.564196IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
EALFHLSAIY DLLDTTVVHN NVQRSVLERD VFGQEIMNIV ACEGLERVEK PETYKQRQLR  60
LTRVGFQQLP LDQELMKKTR AKLSGNYRKD FELEEENNWM LLGWRGRIIS CCTCWLSAIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043520.13e-69PREDICTED: scarecrow-like protein 34
RefseqXP_018724289.13e-69PREDICTED: scarecrow-like protein 34
RefseqXP_018724290.13e-69PREDICTED: scarecrow-like protein 34
RefseqXP_018724291.13e-69PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4711e-73A0A059D471_EUCGR; Uncharacterized protein
STRINGXP_010043520.11e-68(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15599616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.14e-41SCARECROW-like 14