PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS733904.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 186aa MW: 21244.6 Da PI: 9.4218

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS733904.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.1	1.6e-32	107	165	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+ EcS733904.10 107 LDDGYRWRKYGQKAVKNNRFPRSYYKCTFQGCNVKKQVQRLTKDEGVVVTTYEGMHTHS 165 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-34	92	165	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-29	99	166	IPR003657	WRKY domain
PROSITE profile	PS50811	29.23	102	167	IPR003657	WRKY domain
SMART	SM00774	6.7E-38	107	166	IPR003657	WRKY domain
Pfam	PF03106	7.5E-26	108	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MDGYHILFPP SSSSPASAAS PSFPFAHYAY KNAHAFHTGS EMMNHSNETC SSSEVKGELI 60 NSHTDVSRDD EDKAGSDKKK GPSSSSEKKK PRKPRYAFQT RSQVDILDDG YRWRKYGQKA 120 VKNNRFPRSY YKCTFQGCNV KKQVQRLTKD EGVVVTTYEG MHTHSIDKPT DNFEHILNQM 180 HIYNHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-28	97	166	7	76	Probable WRKY transcription factor 4
2lex_A	6e-28	97	166	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	EKKKPRKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010024173.1	1e-138	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A059B3M4	1e-137	A0A059B3M4_EUCGR; Uncharacterized protein
STRING	XP_010024173.1	1e-137	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	5e-54	WRKY DNA-binding protein 75