PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS735089.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 129aa MW: 15078.3 Da PI: 8.948

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS735089.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	72	93	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+++F++ L H + H EcS735089.10 72 PCPVCDERFRSMRALFCHSKIH 93 5*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	4.6	1	23	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.8E-4	1	25	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.34E-6	1	23	No hit	No description
PROSITE pattern	PS00028	0	3	23	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.34E-6	66	93	No hit	No description
SMART	SM00355	0.48	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.055	71	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0035	73	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
YPCKLCDRIY SIGPMLGGHM RCHMDMNLPE REPPLEIGSS SADERRLGYY LRENPKKTWK 60 FSKLKESAQE KPCPVCDERF RSMRALFCHS KIHSGKDDES GDWCKGRGKG SRSMKFCQDH 120 TRPIHDRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034406.1	1e-37	PREDICTED: uncharacterized protein LOC104423640
STRING	XP_010034401.1	1e-68	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16241	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-07	C2H2-like zinc finger protein