PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS736150.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 192aa    MW: 21324.7 Da    PI: 4.2356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS736150.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.9e-151391455
           AP2 14 rWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  EcS736150.10  1 KWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDEAAYKLRG 39
                  8*******965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-17148IPR016177DNA-binding domain
SMARTSM003801.1E-20153IPR001471AP2/ERF domain
CDDcd000182.18E-24147No hitNo description
Gene3DG3DSA:3.30.730.103.9E-23148IPR001471AP2/ERF domain
PfamPF008471.0E-8139IPR001471AP2/ERF domain
PROSITE profilePS5103217.807147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
KWVAEIRLPK NRTRLWLGTF DTAEEAALAY DEAAYKLRGD FARLNFPRLR DGGSYLCDYN  60
PLHSSVCAKL QAICQSLAAN SQKQGKTGEP CFFPDRAMET FDAAAEAAEA AEEMVFKVTL  120
KNEYDADLAY LEQDYKVENS VSSPAFSDES SVAGSSSPES NLALLGFPPS QFEIENFYLE  180
KYPSAEIDWA AI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027841.11e-127PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656656e-46ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E48e-46RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A059AL601e-126A0A059AL60_EUCGR; Uncharacterized protein
STRINGXP_010027841.11e-127(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-33related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]