PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS736265.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 202aa MW: 23230.8 Da PI: 9.7495

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS736265.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	12	61	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 + Er+RR++++ f+eL +l+P+ + p +K ls + L +A +YI+sLq EcS736265.10 12 RKRTERNRRNQMKALFSELHSLVPQqS---PTEKtLSLPDQLGEAANYIRSLQ 61 5678*******************55...88888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.455	7	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-13	9	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-11	12	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	13	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0021	13	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-7	16	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MESKPGSSRP DRKRTERNRR NQMKALFSEL HSLVPQQSPT EKTLSLPDQL GEAANYIRSL 60 QVKVEKMREQ KEQLLEVGKI NTTMNSGPMI GFKSPEIRIW NNKSILEVVL VTGLDGQFMF 120 NETVQVIHEE GADIVNASSS YVGDAMLHTI HAKVRISLYF EPKMVRNCTF RTKSLLQNID 180 FWNSFVETIN KISLWRDVMK IC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057407.1	1e-110	PREDICTED: uncharacterized protein LOC104445269 isoform X1
Refseq	XP_018728570.1	1e-110	PREDICTED: uncharacterized protein LOC104445269 isoform X2
Swissprot	F4JIJ7	4e-35	BH162_ARATH; Transcription factor bHLH162
TrEMBL	A0A059C7W9	1e-109	A0A059C7W9_EUCGR; Uncharacterized protein
STRING	XP_010057407.1	1e-109	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-37	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]