PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS738306.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 110aa    MW: 12745.5 Da    PI: 11.0568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS738306.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-1664105346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +T++E+el+++++   G++ W+ Ia+ ++ gRt++++k++w++
     EcS738306.10  64 VFTPQEEELIIRLHVIIGSR-WSIIAQQLP-GRTDNDVKNHWNT 105
                      69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-5859IPR009057Homeodomain-like
PROSITE profilePS500907.213856IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-102763IPR009057Homeodomain-like
SuperFamilySSF466897.05E-2142109IPR009057Homeodomain-like
PROSITE profilePS5129421.24157110IPR017930Myb domain
SMARTSM007171.7E-1361109IPR001005SANT/Myb domain
PfamPF002494.5E-1464105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2164110IPR009057Homeodomain-like
CDDcd001676.17E-1065107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MRPPCTNKTN NRRGPWATGE DPRTIVQGTG NWGLAPRKAG LRRCGKSCKP RWSNYYQPDS  60
KHEVFTPQEE ELIIRLHVII GSRWSIIAQQ LPGRTDNDVK NHWNTKLRKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22131107107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039154.18e-75PREDICTED: transcription factor MYB35
SwissprotQ9LSI74e-43MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A059A6K02e-73A0A059A6K0_EUCGR; Uncharacterized protein
STRINGXP_010039154.13e-74(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-45MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]