PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS738371.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 118aa    MW: 13684.7 Da    PI: 10.018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS738371.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59e-2228115183
                   EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   f+kvlt sd++++g +++  k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +g ++vF 
  EcS738371.20  28 FCKVLTASDTSTHGGFSVLMKHATEClppldMNQSTPTQELVARDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGNSFVFL 115
                   99****************************9445555669***********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-3316117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-3420116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-1626114No hitNo description
PROSITE profilePS5086311.03928118IPR003340B3 DNA binding domain
SMARTSM010195.6E-1028118IPR003340B3 DNA binding domain
PfamPF023622.8E-2028115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
FFFFLQQSEP MSPDPYLPEP PRPRVHSFCK VLTASDTSTH GGFSVLMKHA TECLPPLDMN  60
QSTPTQELVA RDLHGYEWKF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGN SFVFLRYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-545116101212Auxin response factor 1
4ldw_A3e-545116101212Auxin response factor 1
4ldw_B3e-545116101212Auxin response factor 1
4ldx_A3e-545116101212Auxin response factor 1
4ldx_B3e-545116101212Auxin response factor 1
4ldy_A3e-545116101212Auxin response factor 1
4ldy_B3e-545116101212Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053162.16e-71PREDICTED: auxin response factor 9
SwissprotQ9XED82e-61ARFI_ARATH; Auxin response factor 9
TrEMBLA0A059CGC61e-69A0A059CGC6_EUCGR; Auxin response factor
STRINGXP_010053162.12e-70(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2767633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.28e-58auxin response factor 9