PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS741259.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 341aa    MW: 37464.4 Da    PI: 6.7065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS741259.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000442212591255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  EcS741259.10 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259
                   6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10219272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5219263No hitNo description
Gene3DG3DSA:4.10.280.104.0E-7219267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMAGNPNWWN MHPPSYHHHH HHQPPTSLFH PQFVVGSQNS LADSHTQEHP QSWSQLLLGG  60
LCSEEDNYKY GASHFQEKKL ENWEELQMVN NPSLGVHVVH HPHPQLIDVK QEVSQTSGDL  120
LYSHGVHEEL FLAPSNVNNK PAWPNSSNTI MPVSSPTSCV TTLNNNNSML DFSSTNADSN  180
KNSNNQLRPD HSSECNSAAT GGACKKARVH PSSSQLPLKV RKEKLGDRIT ALHQLVSPFG  240
KTDTASVLLE AIGYIRFLQG QIEALSSPYL RNNGSGNMRN HQSVQGEGNF AFPGDTSLQE  300
NQDNPKDLKS RGLCLVPVSC TMQVGNESGA DYWAPGLGGG F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062498.21e-138PREDICTED: protein NRT1/ PTR FAMILY 1.2
SwissprotQ8S3D12e-58BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A059BUL80.0A0A059BUL8_EUCGR; Uncharacterized protein
STRINGXP_010062499.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.15e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]