PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS742147.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 115aa    MW: 12777.2 Da    PI: 5.2519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS742147.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-096890426
                  ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                  + C+f+ r+G+Ck+G++C+F H+
  EcS742147.10 68 RDCQFYVRNGWCKFGANCRFGHP 90
                  68******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-66892IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-76890IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9436992IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-47089IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
ARPDPDEQPP PFFPSSPPAV GPAVESALVE GMRNVALGEA GDGTGEEKDG NFDDRGPKSH  60
YPFGIYARDC QFYVRNGWCK FGANCRFGHP VKRTGFEEKR ERGEFLEPTK QIECK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029058.13e-61PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A059AQE76e-60A0A059AQE7_EUCGR; Uncharacterized protein
STRINGXP_010029058.11e-60(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2297134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-12C3H family protein