PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS748128.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 86aa MW: 10108.4 Da PI: 10.6161

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS748128.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4e-17	1	43	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd++l++a+++ G++ W+ ++++ +Rt +++k++w+ EcS748128.10 1 KETWTEEEDKILIQAHTEIGNK-WSEMVKRLP-NRTQNSIKNHWN 43 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	5.6E-15	1	43	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	22.709	1	50	IPR017930	Myb domain
SMART	SM00717	1.2E-11	1	48	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-16	2	56	IPR009057	Homeodomain-like
CDD	cd00167	2.48E-9	3	46	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-18	3	44	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
KETWTEEEDK ILIQAHTEIG NKWSEMVKRL PNRTQNSIKN HWNATKRRQY TNSSTSTSDL 60 DSLHQALMLS PRLVSFSIGK RKWNLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1idy_A	7e-18	1	49	5	53	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A	7e-18	1	49	5	53	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019432634.1	3e-24	PREDICTED: transcription factor MYB98-like, partial
Refseq	XP_020097178.1	1e-23	transcription factor MYB115-like
Refseq	XP_021825920.1	8e-24	transcription factor MYB98-like
Swissprot	Q9S7L2	6e-22	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A199UXC0	2e-22	A0A199UXC0_ANACO; Transcription factor MYB98
TrEMBL	A0A2K3ND24	8e-23	A0A2K3ND24_TRIPR; Transcription factor MYB 98-like protein (Fragment)
STRING	XP_008239795.1	8e-23	(Prunus mume)
STRING	EMJ12343	6e-23	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13303	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	6e-24	myb domain protein 98

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]