PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS748440.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 127aa MW: 14328.8 Da PI: 10.6515

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS748440.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37	6e-12	36	123	1	90
EEEE-..-HHHHT..T-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlks..grl.vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++v ps+v +s +r+ ++p kf+++h k +s++++ ++++sW kli + +++ l +GW F++a L+egD+ vF+l++rs + EcS748440.10 36 FISVAYPSYVKNStaARFsSVPVKFMRTHI-K--RSMQVMTIKPKNESWPAKLIKfpWDHGK---L-SGWFPFARATSLCEGDVYVFELTKRSPT 123 66677788888886644459*****994.3..6789999********665655542...4.6******************9987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-13	28	121	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.55E-11	30	121	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.0E-8	37	123	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.854	39	127	IPR003340	B3 DNA binding domain
CDD	cd10017	1.89E-7	55	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
SASRACPAML VARRCNVPCS AALEMARDFK SKHPTFISVA YPSYVKNSTA ARFSSVPVKF 60 MRTHIKRSMQ VMTIKPKNES WPAKLIKFPW DHGKLSGWFP FARATSLCEG DVYVFELTKR 120 SPTVLEV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718135.1	9e-56	PREDICTED: B3 domain-containing protein REM19-like
TrEMBL	A0A059ALH8	1e-73	A0A059ALH8_EUCGR; Uncharacterized protein
STRING	XP_010027828.1	2e-50	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35253	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-08	B3 family protein