PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS751352.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 184aa    MW: 21087.6 Da    PI: 5.51
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS751352.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1858111356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   k+++++++q+++Le+ Fe ++++  e++++LA++l+L+ rqV +WFqNrRa++k
  EcS751352.10  58 KKRRLSANQVKALEKNFEIENKLEPERKARLAEELSLQPRQVAIWFQNRRARWK 111
                   56689************************************************9 PP
2HD-ZIP_I/II129.41.4e-4157149193
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   ekkrrls++qvk+LE++Fe e+kLeperK++la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++Le+e+e+L++el+e
  EcS751352.10  57 EKKRRLSANQVKALEKNFEIENKLEPERKARLAEELSLQPRQVAIWFQNRRARWKTKQLERDYGFLKASYDSLKLDFDSLEQEKESLAAELTE 149
                   69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1951115IPR009057Homeodomain-like
PROSITE profilePS5007117.03853113IPR001356Homeobox domain
SMARTSM003892.6E-1656117IPR001356Homeobox domain
PfamPF000466.7E-1658111IPR001356Homeobox domain
CDDcd000861.35E-1458114No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1960120IPR009057Homeodomain-like
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PfamPF021838.8E-18113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKRLSSSDSS DVWISMCSGK EEKVLKKSQG YSIEFQAMLD SLDQEDHSGE EAGLITEKKR  60
RLSANQVKAL EKNFEIENKL EPERKARLAE ELSLQPRQVA IWFQNRRARW KTKQLERDYG  120
FLKASYDSLK LDFDSLEQEK ESLAAELTEL KVKLRRETSE SSNHSAVKQE SPLSESSEDG  180
KPGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288ERKARLA
2105113RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060054.11e-124PREDICTED: homeobox-leucine zipper protein ATHB-6 isoform X3
SwissprotQ940J13e-53ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A059BKG01e-123A0A059BKG0_EUCGR; Uncharacterized protein
STRINGXP_010060054.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-52homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]