PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS754499.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 136aa    MW: 15487.6 Da    PI: 9.1287
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS754499.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191064256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  rk+ ++++eq   Lee F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  EcS754499.10 10 RKKLRLSREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSK 64
                  678899***********************************************98 PP
2HD-ZIP_I/II121.25.4e-391098189
   HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
                  +kk+rls+eq++lLEesF+ +++L+p +K++la +L+l+prqv+vWFqnrRAR k+kq+E+d+++Lk+++++l++en+rL+ke +eLr+
  EcS754499.10 10 RKKLRLSREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSKLKQTEVDCQFLKKCCETLSDENRRLKKELQELRS 98
                  69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.617666IPR001356Homeobox domain
SMARTSM003895.1E-17870IPR001356Homeobox domain
SuperFamilySSF466895.99E-18974IPR009057Homeodomain-like
CDDcd000868.54E-151067No hitNo description
PfamPF000462.7E-161064IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-171064IPR009057Homeodomain-like
PROSITE patternPS0002704164IPR017970Homeobox, conserved site
SMARTSM003403.9E-1666106IPR003106Leucine zipper, homeobox-associated
PfamPF021839.9E-106698IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
NDGGDFNGGR KKLRLSREQS ALLEESFKLH TTLTPAQKQS LADQLKLKPR QVEVWFQNRR  60
ARSKLKQTEV DCQFLKKCCE TLSDENRRLK KELQELRSSS SPYVQGPGTA AVMLCPSCEE  120
LTRGNSEATR KENCDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046899.18e-94PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466043e-50HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A059CJI42e-92A0A059CJI4_EUCGR; Uncharacterized protein
STRINGXP_010046899.13e-93(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]