PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS756411.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 209aa MW: 23256.7 Da PI: 4.0196

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS756411.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.6	1.2e-12	20	62	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT +E +ll++a +++ + W+ Ia+++ ++t qc++++++ EcS756411.10 20 GNWTDQETLLLLEALELYKEN-WSEIAEHVA-TKTKAQCILHFLQ 62 89***************88.*****.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	21.701	17	68	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	1.5E-9	17	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-13	17	69	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-12	18	66	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-12	20	63	IPR001005	SANT/Myb domain
CDD	cd00167	2.28E-4	38	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSSSDFILME PAELHGVTGG NWTDQETLLL LEALELYKEN WSEIAEHVAT KTKAQCILHF 60 LQMPIQDAFL DCDDDVDATS KENTDLTTTN DDAPISRDTP ERTEGKTDPV EDQPQTSPMD 120 ISKAEDTHEG KVDEKTSSQE EANKSKVAQD NPKLEDAEVK VKDIKENLAL KALREAFEAL 180 GYFSTPESSV SFGEVGNPVM ALVWWTLCF

Functional Description ? help Back to Top
Source	Description
UniProt	Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028579.1	1e-137	PREDICTED: SWI/SNF complex subunit SWI3D
Swissprot	Q8VY05	8e-52	SWI3D_ARATH; SWI/SNF complex subunit SWI3D
TrEMBL	A0A059ANS0	1e-136	A0A059ANS0_EUCGR; Uncharacterized protein
STRING	XP_010028579.1	1e-137	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35282	2	2

Publications ? help Back to Top
Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] Zhou C,Miki B,Wu K CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] Sarnowski TJ, et al. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] Liu ZW, et al. The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci. PLoS Genet., 2014. 10(1): p. e1003948 [PMID:24465213] Liu ZW, et al. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006026 [PMID:27171427]