PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS756446.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 125aa    MW: 14306.1 Da    PI: 9.7449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS756446.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.6e-134289255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr +k   ++ A I++      + k+++lg++ t+ +Aa+a+++ +++++g
  EcS756446.10 42 HYRGVRPRK-PRKFGAVIQV------NgKQVWLGTYKTKIDAARAYDQKALEFRG 89
                  7****9777.9*********......44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.2E-152124IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.101.2E-204197IPR001471AP2/ERF domain
PROSITE profilePS5103216.7664297IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-174298IPR016177DNA-binding domain
CDDcd000181.07E-174299No hitNo description
SMARTSM003807.4E-2242103IPR001471AP2/ERF domain
PfamPF008471.3E-74289IPR001471AP2/ERF domain
PRINTSPR003673.9E-84354IPR001471AP2/ERF domain
PRINTSPR003673.9E-87999IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MASKTLQSPK VAVLRKVVLP QSAESNQTVQ KGSNQSRDEW RHYRGVRPRK PRKFGAVIQV  60
NGKQVWLGTY KTKIDAARAY DQKALEFRGS KAILNFPPDD KKEEVEGDNE VIVKEEEVEG  120
DWHEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-154197463ATERF1
3gcc_A8e-154197463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753PRKPRKF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041307.13e-67PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ8VY902e-16EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A059C1503e-28A0A059C150_EUCGR; Uncharacterized protein
STRINGXP_010041307.11e-66(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-18ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]