PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS756885.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 222aa    MW: 25925.9 Da    PI: 7.7779
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS756885.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.33.7e-37101381128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                   lp G+rFhPtdee v++yL+++v g   +   +i++vdi++++Pw+Lp+        + + + +ew+ ++ +       ++ +r+t sgyWk+tg d
  EcS756885.10  10 LPIGYRFHPTDEEFVDHYLTNRVLGIVEDP-CIIPDVDICRWDPWELPQkfhgesiiRPDDKVQEWWCYCLQTP-----QQVKRTTPSGYWKKTGPD 100
                   699*********************998666.57***************6466655443333667******9866.....5789************** PP

           NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++v++ ++ ++g+kktLvf+  + +kg+kt+Wv+hey+l
  EcS756885.10 101 RNVKA-RDIKIGTKKTLVFHIRQGSKGVKTNWVIHEYHL 138
                   ****9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-455161IPR003441NAC domain
PROSITE profilePS5100539.6910161IPR003441NAC domain
PfamPF023654.2E-2211138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGAVIIPQNL PIGYRFHPTD EEFVDHYLTN RVLGIVEDPC IIPDVDICRW DPWELPQKFH  60
GESIIRPDDK VQEWWCYCLQ TPQQVKRTTP SGYWKKTGPD RNVKARDIKI GTKKTLVFHI  120
RQGSKGVKTN WVIHEYHLLI KNVLNLSLLN RNYVLCRIKH KGDEKADNST MELVYEASGL  180
ENLDSILRQP DHEDLFTEVR RKICLVRVLN ICLNEHGKCL ND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-29916414171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066085.11e-140PREDICTED: NAC domain-containing protein 37
TrEMBLA0A059BC531e-137A0A059BC53_EUCGR; Uncharacterized protein
STRINGXP_010066085.11e-140(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3528322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-42NAC transcription factor-like 9