PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS758325.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 122aa    MW: 14011 Da    PI: 7.5721
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS758325.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67.1e-1111102280
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfv 80 
                   +k+l++sd ++++rl +p+  ++++             k++e+ ++++ de+   + ++ + y+ +sg+yvl+++W keFv+  gL egD +
  EcS758325.10  11 KKTLKKSDLGQLSRLLIPRAGVATYvlpcmdeerarRVKSNEGAEVVVWDEDThSEHQLVFAYWASSGSYVLKGCWmKEFVQRRGLAEGDEI 102
                   699*************************99988888444457889999998876666666677*************668***********66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-137110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1410107IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-1510118No hitNo description
PfamPF023627.3E-812104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
LVLRYDPYQI KKTLKKSDLG QLSRLLIPRA GVATYVLPCM DEERARRVKS NEGAEVVVWD  60
EDTHSEHQLV FAYWASSGSY VLKGCWMKEF VQRRGLAEGD EIGIHWDPIA SKFDFSLLHK  120
AN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041685.12e-85PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5C55e-84A0A059C5C5_EUCGR; Uncharacterized protein
STRINGXP_010041685.18e-85(Eucalyptus grandis)
STRINGXP_010058653.11e-84(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.19e-23B3 family protein