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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcS762054.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 157aa MW: 17458.3 Da PI: 9.59 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 24.3 | 5.6e-08 | 4 | 59 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-.STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.as....kapskK.lsKaeiLekAveYIksLq 55
++r++ RRd+i + + +Lr ++P ++ + +s ae L++A YIk L+
EcS762054.10 4 PKRDKCRRDNIAELYLKLRPMVPGvCPkvpsRSHSVSyAPRAELLREAFLYIKFLE 59
5899********************8779*99666666699*************995 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 9.801 | 1 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.0017 | 4 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.15E-5 | 4 | 62 | No hit | No description |
| Pfam | PF00010 | 2.2E-5 | 4 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.32E-7 | 6 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.7E-6 | 8 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 157 aa Download sequence Send to blast |
HDGPKRDKCR RDNIAELYLK LRPMVPGVCP KVPSRSHSVS YAPRAELLRE AFLYIKFLEE 60 ERVRLEKLKM SSAQVIANSS SISVALSDSN LAVFAITSSV RRNLVTNIIS VFSQHRAEIL 120 AANVMAQEGW MSMTVTASVN DVADGAIEKI KQDILMV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010036858.1 | 2e-98 | PREDICTED: uncharacterized protein LOC104425763 | ||||
| STRING | XP_010036858.1 | 9e-98 | (Eucalyptus grandis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM27980 | 2 | 3 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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