PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS769467.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 224aa    MW: 24998.9 Da    PI: 5.8197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS769467.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.5e-0726651255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  EcS769467.10 26 RREKISERMKYLQDLVPGC----NKIAGKAGMLDEIINYVQSLQ 65
                  *******************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8771464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-52070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-122283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-62669No hitNo description
Gene3DG3DSA:4.10.280.102.6E-132782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
ALQRKIQEFR RSKSPIISMS ELAEARREKI SERMKYLQDL VPGCNKIAGK AGMLDEIINY  60
VQSLQGQVEF LSMKLAAVTS RVDFNMDPLL AKEMLPNCTA SFPAIDIPTE MINAVYLQYN  120
PAHQVVSCQE SEVIPNANVP RTISAPVPMA EEFFDPSSFA VTPANPFSQL LLRCEISFQA  180
FLILVSYLFL CSHFSPPPLG TLTYKTFSME SQQGRTTNFA GAIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066167.21e-88PREDICTED: transcription factor bHLH63
TrEMBLA0A059BEA53e-87A0A059BEA5_EUCGR; Uncharacterized protein
STRINGXP_010066167.12e-91(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59472543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-36cryptochrome-interacting basic-helix-loop-helix 1