PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS771492.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 147aa MW: 16628.9 Da PI: 8.7635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS771492.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.9e-20	14	97	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA GF vrk ++ ++ +ge t+rtfvC++eg++++++ k +++ +r e r+gC a++k k + ++ +ev++ + eHnH++ EcS771492.10 14 YVAYAIGKGFGVRKGNMFRN-SKGELTRRTFVCNCEGYSDSSNGK--EKNYQRYEVRCGCLAHIKYKVD-NSIYEVIEYVVEHNHPFI 97 99************9999.7788***********99888..89999***********99.*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-17	14	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
GMVFSNQFEA YHKYVAYAIG KGFGVRKGNM FRNSKGELTR RTFVCNCEGY SDSSNGKEKN 60 YQRYEVRCGC LAHIKYKVDN SIYEVIEYVV EHNHPFIPED QKHMIRCGRL ISDTCKSVLV 120 DMNKASIGGT TAYKFLANEV GGSQNLG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056981.1	8e-74	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059AXR1	3e-72	A0A059AXR1_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010056981.1	3e-73	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14997	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-13	FAR1-related sequence 5