PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS771728.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 248aa MW: 27974 Da PI: 5.3825

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS771728.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124	1.3e-38	54	184	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+GfrF+Ptd+el+ +yLk+kv+g+++++ +v+++vd+yk++P L + + + +ewyfF+++d+k+++ +r++r t sg+W tgkd + EcS771728.10 54 PAGFRFDPTDQELIIHYLKAKVAGDPIPIGDVFADVDLYKFDPGMLIEnhqGAGIDGDEWYFFTPSDTKHPSRSRPTRFTPSGFWWVTGKDSVIRM- 149 89******************************************742223334778*****************************99999. PP NAM 96 kgelvglkktLvfykg.rapkgektdWvmheyrle 129 k++++g k +L+fy+ +++++ t W+mheyrle EcS771728.10 150 KNKTIGYKSSLAFYRVdSQSRSDGTAWCMHEYRLE 184 8999******8746777889*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-45	50	215	IPR003441	NAC domain
PROSITE profile	PS51005	44.101	53	216	IPR003441	NAC domain
Pfam	PF02365	6.2E-23	54	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEKNDQSHNR DRDDQPEGMH VDGQLKVGVD PCTPSSSQEL VASPPSPPSL ADFPAGFRFD 60 PTDQELIIHY LKAKVAGDPI PIGDVFADVD LYKFDPGMLI ENHQGAGIDG DEWYFFTPSD 120 TKHPSRSRPT RFTPSGFWWV TGKDSVIRMK NKTIGYKSSL AFYRVDSQSR SDGTAWCMHE 180 YRLEADEKRD RASVDGKKGG KDKMLDEWVL CKVYTPKHGQ QSDLSPKKRD RPNLDWPDGD 240 GDCQQFSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-35	47	221	14	173	NAC domain-containing protein 19
3swm_B	1e-35	47	221	14	173	NAC domain-containing protein 19
3swm_C	1e-35	47	221	14	173	NAC domain-containing protein 19
3swm_D	1e-35	47	221	14	173	NAC domain-containing protein 19
3swp_A	1e-35	47	221	14	173	NAC domain-containing protein 19
3swp_B	1e-35	47	221	14	173	NAC domain-containing protein 19
3swp_C	1e-35	47	221	14	173	NAC domain-containing protein 19
3swp_D	1e-35	47	221	14	173	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046701.1	1e-180	PREDICTED: NAC transcription factor ONAC010
TrEMBL	A0A059D9B1	1e-179	A0A059D9B1_EUCGR; Uncharacterized protein
STRING	XP_010046701.1	1e-180	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35315	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	3e-38	NAC domain containing protein 47