PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS772733.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 79aa    MW: 9236.38 Da    PI: 9.1387
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS772733.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86.1e-063856625
                  -SGGGGTS--TTTTT-SS-S CS
       zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                  C+f+ r G+C +G+ C++ H
  EcS772733.10 38 CSFYIR-GECTRGAECPYRH 56
                  9*9999.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161312.6E-82169IPR032297Torus domain
PROSITE profilePS5010313.9393259IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-63258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-73457IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
TRAGLDYESS YGKVRANDTI LKLQRTTPYY KRNRAHVCSF YIRGECTRGA ECPYRHEMPV  60
TGELSQQNIK DRYYGYVSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_P9e-241775144204Pre-mRNA-splicing factor RBM22
5xjc_O9e-241775144204Pre-mRNA-splicing factor RBM22
5yzg_O9e-241775144204Pre-mRNA-splicing factor RBM22
5z56_O9e-241775144204Pre-mRNA-splicing factor RBM22
5z57_O9e-241775144204Pre-mRNA-splicing factor RBM22
6ff4_P9e-241775144204Pre-mRNA-splicing factor RBM22
6ff7_P9e-241775144204Pre-mRNA-splicing factor RBM22
6icz_O9e-241775144204Pre-mRNA-splicing factor RBM22
6id0_O9e-241775144204Pre-mRNA-splicing factor RBM22
6id1_O9e-241775144204Pre-mRNA-splicing factor RBM22
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041142.14e-52PREDICTED: zinc finger CCCH domain-containing protein 4
SwissprotQ9LNV59e-45C3H4_ARATH; Zinc finger CCCH domain-containing protein 4
TrEMBLA0A059AFG11e-47A0A059AFG1_EUCGR; Uncharacterized protein (Fragment)
TrEMBLA0A2I0IQ754e-48A0A2I0IQ75_PUNGR; Uncharacterized protein
STRINGXP_010041142.12e-51(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM347933