PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS774074.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 168aa    MW: 18855.1 Da    PI: 9.9447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS774074.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-181358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l  +v+q+G+++W++I+  ++ gR++k+c++rw + 
     EcS774074.10 13 KGSWSPQEDATLMTLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 58
                     799*****************************.***********985 PP
2Myb_DNA-binding54.72.2e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +v+a+k +G++ W+tIar ++ gRt++ +k++w++ 
     EcS774074.10  67 PFTPLEDATIVEAHKVHGNK-WATIARLLP-GRTDNAIKNHWNST 109
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8863IPR017930Myb domain
SuperFamilySSF466891.05E-3010106IPR009057Homeodomain-like
SMARTSM007173.0E-141261IPR001005SANT/Myb domain
PfamPF002491.0E-171358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241466IPR009057Homeodomain-like
CDDcd001671.98E-131557No hitNo description
SMARTSM007174.6E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.55664114IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-2367113IPR009057Homeodomain-like
CDDcd001672.83E-1167110No hitNo description
PfamPF002492.3E-1467109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRVTSVDGVD RVKGSWSPQE DATLMTLVEQ HGPRNWSLIS TGIPGRSGKS CRLRWCNQLS  60
PTVQHRPFTP LEDATIVEAH KVHGNKWATI ARLLPGRTDN AIKNHWNSTL RRKRPGEQSS  120
MSSESNSEKH PGRDNTAAES ETDLEIKRQC LRVLPDENSR DGEVRPKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-38101134107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031187.11e-119PREDICTED: myb-related protein A
SwissprotQ9SN127e-52MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A059A9S41e-100A0A059A9S4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010031187.11e-119(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.16e-55myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]