PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS776745.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 236aa    MW: 26527.6 Da    PI: 8.7855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS776745.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-1367111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
     EcS776745.10  67 PWTQEEHRRFLMGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 111
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.13960116IPR017930Myb domain
SuperFamilySSF466897.18E-1662115IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-1763115IPR006447Myb domain, plants
SMARTSM007171.8E-1064114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-1164111IPR009057Homeodomain-like
CDDcd001674.11E-967112No hitNo description
PfamPF002492.3E-1067111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
KSVRDVANKY RELEEDVCEI EAGRDPIHGY LCSSFALESF DERDFDACRK KSSAGRGADH  60
ERKKGVPWTQ EEHRRFLMGL LKYGKGDWRN ISRNFVVSKT PTQVASHAQK YFMRQVSGVK  120
DKRRPSIHDI TTVNLTDPAS SSENNRVSSL DQLNALSSQQ KLIGAPELAL DHSLPNYGGF  180
MFFDSSHGHL LMPDAYGFGL NGKRWQEKDN PDGVYPGAGF RSSLIGIHSS RHQIQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067497.11e-178PREDICTED: transcription factor DIVARICATA
TrEMBLA0A059BHW71e-176A0A059BHW7_EUCGR; Uncharacterized protein
STRINGXP_010067497.11e-177(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-64MYB family protein