PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS778359.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 114aa    MW: 12625.4 Da    PI: 5.916
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS778359.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.9e-171154245
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  +i n   r vt+skRr+g++ KA+ L+ LC+a++av++fs+ gk
  EcS778359.10 11 KIANPAARLVTYSKRRKGLFNKASQLCRLCGARAAVVVFSPAGK 54
                  6889999**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.965262IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-21261IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-22476IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-13424IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201158IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-132439IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-133960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGKRRRTEIS KIANPAARLV TYSKRRKGLF NKASQLCRLC GARAAVVVFS PAGKPCSFGE  60
PSADEIIGDY LRHGDCDGDA TPPMGLTQWG DWMETEWEAC ATEEDLEALI LKYE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046031.12e-77PREDICTED: protein MADS AFFECTING FLOWERING 5-like
TrEMBLA0A059D1D14e-77A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010046031.17e-77(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-21AGAMOUS-like 61