PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS779080.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YA

Protein Properties

Length: 172aa MW: 18917.3 Da PI: 11.0215

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS779080.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.9	3.5e-33	25	81	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rak+e+++kl k+rkpylheSRh hAl+R RgsgGrF EcS779080.10 25 DGPIYVNAKQYHGILRRRQSRAKMEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 81 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.6E-37	23	84	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.545	24	84	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-24	27	49	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.0E-28	27	81	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-24	58	81	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
QSQVGSQMLG MAPGRVPLPL NLADDGPIYV NAKQYHGILR RRQSRAKMEA QNKLVKARKP 60 YLHESRHLHA LNRVRGSGGR FLSTKQRQQL DPASSSHSPF ATGPRDRNKD AYEPETHQVG 120 ASERQFTSTM AGADFYPDSR FSGISTHMGG AMQCNKGLMR GGAAQHCSSS VR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	25	87	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047511.1	1e-122	PREDICTED: nuclear transcription factor Y subunit A-3
Refseq	XP_018725338.1	1e-122	PREDICTED: nuclear transcription factor Y subunit A-3
Swissprot	Q9LVJ7	4e-37	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A059CMQ5	1e-121	A0A059CMQ5_EUCGR; Uncharacterized protein
STRING	XP_010047511.1	1e-122	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	2e-39	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]