PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS782206.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 225aa    MW: 25396.2 Da    PI: 4.565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS782206.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS172.43.5e-53221980298
          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                   a ++ +e+sP++kf+h+taNqaIlea+  ++ vH++Dfdi++G+QWp+L+  La  +   +slRiT+++  + + + ++++tg+rL++fA++++++f
  EcS782206.10   2 AIQMIQELSPYIKFAHFTANQAILEATLADRDVHVVDFDIMEGIQWPPLMVDLARHN--EASLRITAIVT-DLETEASIQQTGRRLKEFADSIDLRF 95 
                   678899************************************************965..569*******9.66799********************* PP

          GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adh.nsesFlerflealeyysalf 268
                    f+ l+ ++ ed+  +++  + g +++ n++++  +++++ +s+     ++L  +  lsPk+vv+ve+e    a+  +s sF+e f+eal+yy+al 
  EcS782206.10  96 TFDQLLIQEEEDF--RTI-HQAGHTVIANCMINQPHMPSKCLSMVR---TFLGGMTALSPKIVVLVEEEllnfAKAsSSLSFVEFFCEALHYYMALS 186
                   ****988755555..666.46799**************88888877...********************86654444667***************** PP

          GRAS 269 dsl.eaklpres..eerikvErellgreivnvv 298
                   dsl +++  +       +++E+e+lg++i + v
  EcS782206.10 187 DSLvNVSSFTGGyeMCLKVIEQEVLGKKILDSV 219
                   ***75553222233677899*********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.4451225IPR005202Transcription factor GRAS
PfamPF035141.2E-502219IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
SAIQMIQELS PYIKFAHFTA NQAILEATLA DRDVHVVDFD IMEGIQWPPL MVDLARHNEA  60
SLRITAIVTD LETEASIQQT GRRLKEFADS IDLRFTFDQL LIQEEEDFRT IHQAGHTVIA  120
NCMINQPHMP SKCLSMVRTF LGGMTALSPK IVVLVEEELL NFAKASSSLS FVEFFCEALH  180
YYMALSDSLV NVSSFTGGYE MCLKVIEQEV LGKKILDSVR QFPCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-28121597300Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276350.16e-97PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A059AKA91e-145A0A059AKA9_EUCGR; Uncharacterized protein
STRINGXP_004503962.16e-95(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3534422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-34GRAS family protein