PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS782447.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 235aa    MW: 26509.2 Da    PI: 8.3255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS782447.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-1378129155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  EcS782447.10  78 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YIQRGDQASIIGGAINFVKELE 129
                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-1376133No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1476133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58677128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1677141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1078129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1083134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
LDRNEHGEFL DYPTEKDFPC GEWNNNSCSS DAGNNTAQCH LNNDNSNDGS SSHRAAAVGR  60
TKRRRTKSRK NKEDIESQRM THIAVERNRR KQMNEYLSVL RSLMPESYIQ RGDQASIIGG  120
AINFVKELEQ KLQLLGVQKE MECLKSDDDH DDKPVSPFSE FFTFHKYNNS NSSNNSSSSP  180
SPSTATTTTA YYGSTDETAA GNKRLSAIAD IEVTMVESHA NLRIRTKRRP KQILK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17889RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025161.11e-176PREDICTED: transcription factor bHLH94
SwissprotQ9C7T46e-45BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A059B6K51e-175A0A059B6K5_EUCGR; Uncharacterized protein
STRINGXP_010025161.11e-176(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]